rs28091965 SNP Detail

Summary

• ID
  rs28091965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99034651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAGTTT TAATAGTGTC
  ATTACAAAGC AATTACACTA AGCACCTACC TGTGTGTAAC CTTGAGATAG ATACTTTCGT
  CTGCCATGTT CTCCTGCTAT GATTTCAAGA GAAGACATTT ATTGTGATAG ATTGGGAATC
  ATGAGTGCTC TGGTGAGCTC AGTGCTAATG AAATCTCCAA AGGTTTTCTC TCTTATTCAG
  Y
  ACTACTCCTA AGCTTTGAAT CTGACAATAG CTATTTGTTA GGCAAAGCGA TCAATTAATA
  TAGTCTCTCT CAATCCCATA TGTATTTAAG TGGCCATATC TAAATATTTG CAATATACTT
  TTCAAGTGCA AGAATTTCAG TTGTGTGTGG AATAGAAAAA AATTCAAGGA AAAATGCAGT
  GAAAAAAGTA TGGTGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38240802	NES09552723	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C	C	C	C		T	C	C		C
ss45613592	mCV23910419	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss147095542	ENSMUSSNP445523	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321222906	CHEV_4_98813105	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28091965					SNP	C	T	C	T	T	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240802	NES09552723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99034651 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	500 bp downstream
Rr595831	regulatory region 595831	469 bp proximal
Rr595832	regulatory region 595832	1820 bp proximal