rs28091964 SNP Detail

Summary

• ID
  rs28091964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99034699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTGTA ACCTTGAGAT
  AGATACTTTC GTCTGCCATG TTCTCCTGCT ATGATTTCAA GAGAAGACAT TTATTGTGAT
  AGATTGGGAA TCATGAGTGC TCTGGTGAGC TCAGTGCTAA TGAAATCTCC AAAGGTTTTC
  TCTCTTATTC AGCACTACTC CTAAGCTTTG AATCTGACAA TAGCTATTTG TTAGGCAAAG
  Y
  GATCAATTAA TATAGTCTCT CTCAATCCCA TATGTATTTA AGTGGCCATA TCTAAATATT
  TGCAATATAC TTTTCAAGTG CAAGAATTTC AGTTGTGTGT GGAATAGAAA AAAATTCAAG
  GAAAAATGCA GTGAAAAAAG TATGGTGATC CATTTCTAAG TATTTGTGTA AATTATTCTC
  TTGCCAGCAC TTTCCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38240800	NES09552725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28091964					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240800	NES09552725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99034699 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	452 bp downstream
Rr595831	regulatory region 595831	421 bp proximal
Rr595832	regulatory region 595832	1772 bp proximal