rs28091960 SNP Detail

Summary

• ID
  rs28091960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99035289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatcccctg gaactagagg tatagaagat
  tataagctac catgtgggtg ctggtaatcg aacctgggtc ctctacagaa gcaatacgtg
  tacttaactg ctgagccaca tcttcagccc ACTTAGGTTG CTTATTATGG TGCTGGAGAC
  Y
  GAGTGTAGGG TTGTACCTGC TAGTGCTCTA TCAGTGACTC TCATCTCAGA GAACACCTTG
  GCAAAGGAGG TTATCACCAG GGTGCTTCAG CAATGACACC AAGCCAAAAG ATTCTCCTGC
  AGCGTTGGTG CGAAGCCTCT TACTTACGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38240795	NES09552622	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T		T
ss321222912	CHEV_4_98813743	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28091960					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240795	NES09552622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99035289 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	within coordinates
Rr595831	regulatory region 595831	148 bp distal
Rr595832	regulatory region 595832	1182 bp proximal