rs28091920 SNP Detail

Summary

• ID
  rs28091920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99048630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTG GCCTTTAAGG AATTTGACTG
  M
  CCTAATTCAG CAACATTCTC TGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss38240750	NES09552022	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		C	A	C		A	A		A
ss45607865	mCV22702854	ABI	CRAMUS_MOUSE	f	SNP		A	A					C
ss147095946	ENSMUSSNP140790	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321222990	CHEV_4_98827084	CHEVERUD	SCREENING_POP	f	SNP												C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs28091920					SNP	A	A	A	A	A	A	A	C	C	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240750	NES09552022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99048630 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	within coordinates
Rr376904	regulatory region 376904	552 bp upstream
Rr595834	regulatory region 595834	within coordinates
Rr595835	regulatory region 595835	975 bp proximal
Rr595836	regulatory region 595836	1239 bp proximal
Tssr37925	transcription start site region 37925	1612 bp downstream