rs28091919 SNP Detail

Summary

• ID
  rs28091919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99051496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGTTCT CTTAGCCAAC
  AGTGGCGTCA GAAAATGCTC GTACTTCTAG GAGACAGAAA AGCTCCAGAA TCGGGCTCTG
  TTTTCGGGTG TAGGATATTG GACTTTCTCC TCGTATGTAC TGCAACACAA AACAAGTATG
  TGATTATCAG CTTTATGTTC CCCCTCCCCC AAGTAAGCCA TCTCTCCTTT CTCCTAACAC
  R
  TTTGACGGTT ATGGGATTGC TTTCAGAATC AACAGGCTGT GATTCACGGT GAGTACAGTC
  TGGCATAACT CTTTTCTTTT CCTTTCAGTA CTTGATTGTA TTTGTTGGTT CTCAGAAAGA
  AATACTAAGG AGGCAAAGTT TCTGAACTTT CATTTACCCA TTCACAATAA TAATCTATTA
  ATAAGCACTT AAATAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38240749	NES09551959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28091919					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240749	NES09551959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99051496 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	1617 bp upstream
Rr376904	regulatory region 376904	768 bp downstream
Rr595835	regulatory region 595835	1628 bp distal
Rr595836	regulatory region 595836	1222 bp distal
Rr595837	regulatory region 595837	319 bp proximal