rs28090367 SNP Detail

Summary

• ID
  rs28090367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82460178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATATA GGTACACTGT
  ATTGAGTGGG TGACCGAGAG TAGCAGAGGT GTGTCCCCCA CCCCCCAGAT GCTTAGGCCT
  GTCCCTTTGG TAAGTATTTA CTACCAAAAG CTAGTCACAG ACTGTTGGGG ACACATGCCT
  GTAAGAGGGT AACAGTTTCC CAGGAACAAT TCTTTCATTT ATTACGTTTC TTTTGTGAGT
  R
  GAAAGAATGA ATATGTGCCT TTTCTCACGT GATGCTCATT TTGTCCTGAT TTAAAAATTT
  TTTTTGCTTT GCATCTTTCT TTTGGATCAT GATGAGAAGT GACAATAGGC CACTGGTAGG
  GTCTCCTAGG CTTAGCAGAG ACACAGCCAT GGGAAGGCCG CTAGTCCTTC CTGCTAAAGC
  CTGCAGCATG CACACAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38227000	NES09605762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss321185784	CHEV_4_82187845	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28090367					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38227000	NES09605762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82460178 () rs orientation: forward

Symbol	Name	Function Class
Gm11266	predicted gene 11266	within coordinates
Rr594367	regulatory region 594367	1516 bp distal
Rr594368	regulatory region 594368	1064 bp distal
Rr594369	regulatory region 594369	65 bp proximal
Rr594370	regulatory region 594370	367 bp proximal
Rr594371	regulatory region 594371	1182 bp proximal