rs28090366 SNP Detail

Summary

• ID
  rs28090366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82460267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTATTT ACTACCAAAA
  GCTAGTCACA GACTGTTGGG GACACATGCC TGTAAGAGGG TAACAGTTTC CCAGGAACAA
  TTCTTTCATT TATTACGTTT CTTTTGTGAG TAGAAAGAAT GAATATGTGC CTTTTCTCAC
  GTGATGCTCA TTTTGTCCTG ATTTAAAAAT TTTTTTTGCT TTGCATCTTT CTTTTGGATC
  R
  TGATGAGAAG TGACAATAGG CCACTGGTAG GGTCTCCTAG GCTTAGCAGA GACACAGCCA
  TGGGAAGGCC GCTAGTCCTT CCTGCTAAAG CCTGCAGCAT GCACACAAGA CTGTTTGGAG
  AATCTGGTGG CCTCTAGGAA GGAAGGAGAT GAGATGAAGA AGCCTGGGGA TTCAGCTGGT
  TCCAAGAAAT GTGTAAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38226999	NES09605763	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28090366					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38226999	NES09605763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82460267 () rs orientation: forward

Symbol	Name	Function Class
Gm11266	predicted gene 11266	within coordinates
Rr594367	regulatory region 594367	1605 bp distal
Rr594368	regulatory region 594368	1153 bp distal
Rr594369	regulatory region 594369	within coordinates
Rr594370	regulatory region 594370	278 bp proximal
Rr594371	regulatory region 594371	1093 bp proximal