rs28090365 SNP Detail

Summary

• ID
  rs28090365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82460916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGCTG TGTGCTGCAT
  GCGGGCTACT GTATTTTATT TGGTTTTCTT TGCATAAAAT TTAGGCTAGC AGGACAAAGC
  TTGTTTAAAA GCAAACCCTT TTGGTTGGTC TGCAAACAAT AATTCTGCCT TGTGGGTGAT
  GATCTGGTTT GAGGGGAACC ATTTAAAATT TCAGAACCCC TTATTCCTTC TCTTAAAAGT
  R
  AAGAGTTTTG AATAAGATGT TCAAGGGCTC CCTTAAGCTC CAGGGTTGAA TAACTGGTAC
  ACTGAGCCAT CTTTTCTCGG AGCCCTGCAA ATGGAATTTG TTAATTTCTT TGCAGGTGCA
  GGCACATTTT AGCATCCAAA GTTTCCTGAT TCTGAGCAAA GATTTTCTAA AAGCGCAAAA
  AATATATCTC TTTTCAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38226998	NES09605764	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28090365					SNP	A	A	A	A	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38226998	NES09605764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82460916 () rs orientation: forward

Symbol	Name	Function Class
Gm11266	predicted gene 11266	within coordinates
Rr594368	regulatory region 594368	1802 bp distal
Rr594369	regulatory region 594369	83 bp distal
Rr594370	regulatory region 594370	350 bp distal
Rr594371	regulatory region 594371	444 bp proximal