rs28088839 SNP Detail

Summary

• ID
  rs28088839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96687854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTGGTG TCCTCACATT
  GGCTTAGCTC TCCTTCTTAA TTCCTCTCAC CTGCATAGCC AGATTTTGTG AATAGGGTTT
  TGCTTCTTAC AATTAAAAAT CAAAACACCC TCTGCTTAAA CCAGCAGCAA CGATGCTGCC
  AATTCTAATC TAGACCACTT GGTGGCAGTA AAGCAGAAAT GTCTGCAGAC AAAGTAGAAA
  Y
  CCCTTCAGAA CTGTAATACA TTTTATAGAC CAAGACAACT GCAGTTGTAA AACATTATCG
  TGTATCAATA GGCATATTTT CTGATCAAAT CTTTATAAGG CTCAAATAGG CTCATAAATA
  CTGAGCTCTC TGGTTTGGCT TACTCATGTT TCATGCTTCC GTTTAAGATA TTTTGGAGGG
  GTGGAAATCT AGCAAATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38250664	NES09536848	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28088839					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38250664	NES09536848	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96687854 () rs orientation: forward

Symbol	Name	Function Class
Rr376882	regulatory region 376882	807 bp upstream
Rr595532	regulatory region 595532	1663 bp distal
Rr595533	regulatory region 595533	within coordinates
Rr595534	regulatory region 595534	29 bp distal