rs28084049 SNP Detail

Summary

• ID
  rs28084049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88461855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAAGGA ATTAGTGGCT
  ACAAATTGAT GCTGGGTTTC AGAAGACACA GGGACTGGAT TAGCAGTTCT TCAGAACACG
  GTGAACGCAG TCTCGGGATC AGCTACTCCA AATGTAGTTG TGTGGTCATT GGGATGGTAA
  TCAAGTTGAA GCCATTTTCA TTTTAAGATC CAACACATAA CTAAAAATTT ATGAGCCTGA
  Y
  ATTCATATCC TGCTTGTAAA CTCTCTCTGA GGATAGTCTC ATTCTCTATT TAAAACATTG
  AAAAGTGGTA ACCCTGTTTC TGTGGAAGGT CATGGTAGCT CTGGCATCTT CAAGACAGAC
  TTATATGAAG CAAAATGTAT TTACAATAGA AAAATTAGTA AAAGTTGTAT TTGTGCATCA
  CACTGTCTAT TCCTTTAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201976	NES09560332	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28084049					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201976	NES09560332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88461855 () rs orientation: forward

Symbol	Name	Function Class
Rr595011	regulatory region 595011	183 bp proximal
Rr595012	regulatory region 595012	452 bp proximal