rs28084041 SNP Detail

Summary

• ID
  rs28084041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88463413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATAGGA ATCTATCCAT
  CTTTGTCACC CAGGGCTGTG AGTTCAGGCA TTCTCTGCTC TGTCTGGCTT TCATGTGGGT
  ACAGAGGAGC CAAACTCAGG CCCTCCTATA TGCACTGCCA GGATTCTACT AACTGAGCCA
  TCTTTCCAAT GCTTGCTTTA ACTACCTAAG TACCAAAGCA AACCAAACAA AGCAAGCTAA
  Y
  AAAATCCACT CCTTATATTT ATCTACAATA AATCAGTAGC CCTACTCTCT TTTAGTAAAT
  AGTAACATTT ATTTATATCA TATATAATTT GAGTAAGTGG GGTATTTATA TAATATCCTT
  CAAGAATAAA GAGTGTATAG GCAGAATTTC TAAAGTCTTG ATACAGGGCC AGCAACTGAA
  AATAGCACCA ACCTGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201968	NES09560245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28084041					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201968	NES09560245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88463413 () rs orientation: forward

Symbol	Name	Function Class
Rr595011	regulatory region 595011	965 bp distal
Rr595012	regulatory region 595012	1085 bp distal