rs28083857 SNP Detail

Summary

• ID
  rs28083857
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88559468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTCTGC TCCGTCCCCC
  TAAGCTAGGA AGAGCCGGAG TGAGTGAGTG CGGCAGCTCA TGAGTGATTT GTTTTGGTTT
  GCATGGTTGA TCAAGACCAT TGTTGGGCGA CACCTAGTGG TGACAAGTTT CAGCAAAGCT
  CCTGGTCCCC GGTTGATGAC AAAGGACAGG GAAGTGCCTG TCGTGAGCCG GCCAGGGTGA
  M
  GGAGGCCCGG CCAAGCAGGC GGGTGCGTCC CAGAAATGGA GTTGTGTTAT AGTATGGTCC
  CTACCTAGGA GGTTGTATGT GGAGCTCTAA GGGGGGCGGG GGAAGAGAAA GTTGCTGTAC
  ACCTTCTTGG GACAAATGGT AGGGCTGGTG GAAGCTTGAT CAGGTCTACA ACAGGGCTTA
  AGGACTTAAG CAGGAGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201783	NES09557113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28083857					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201783	NES09557113	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88559468 () rs orientation: forward

Symbol	Name	Function Class
Rr398329	regulatory region 398329	within coordinates
Rr595016	regulatory region 595016	within coordinates
Rr595017	regulatory region 595017	76 bp distal