rs28083855 SNP Detail

Summary

• ID
  rs28083855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88561055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTCTGTA GTATTCTTCA
  ACTTAAAACA AATAAAATAT TCTTCAAACC TCAGCACTGG CTATTCCCAG GAGTCTGATA
  CTGATCTCAA GATGGTGTTA CTCCCGCAGT GCATGGGACT GAGGGAAGTT AGAGAGTGGT
  AAATCTGGGG AAGAGTTGGT CAGAGAGGAC TAAGGCAGAA TCCTTGGTTG TACGTACAAT
  R
  GAAGACTATA CTGGAGAAAT GTAAAGTATA GATTTGGCCA TCAATGAAGG ACAAGTATAA
  GATGAATAGA TTTACTCATG TAAACTGTAG GCAATGTCAC ATGCATCCAC AATATTTGCA
  CTCTGGCCCT GCATATAATT TTTGTACTGA AGAATATCAG TTTAAACATT AAAAAATATT
  TGAAAAGATG GAAAGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201781	NES09557012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28083855					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201781	NES09557012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88561055 () rs orientation: forward

Symbol	Name	Function Class
Ifna13	interferon alpha 13	823 bp downstream
Rr398329	regulatory region 398329	1470 bp downstream
Rr595016	regulatory region 595016	416 bp distal
Rr595017	regulatory region 595017	1663 bp distal