rs28079374 SNP Detail

Summary

• ID
  rs28079374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87036528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTAAG AATGCCTAAC
  CTTTGACCCA TCTTTCCAGC CCTTCCTCCT ATGTTTATTA TGTAAATCAC CAAGTCTTTG
  CCAAATCTGC CCTGGAACAG TACTGGTCCA AACTAATGAA GAATGTTCAC TTTAGCTGAT
  GATTCAGAAA AGTAGAACAT AGCTGAGCAT AGTCTATACC TCTGTGTCAG TTCACAGTGT
  R
  AAATCTGAAC TTCTCACTTA GTAGGTTCAT AAGGCAACAG CAGGGAAGTG GAGTTAATTG
  AAGAACTCAC AATAAAACAA TAACGTGTAT TACCATATGC TGGGTGGCAA ACTAAACCCA
  ACGAAGTAGC CACTAATATC ACCCCCAGTG TGCTGACAGG GGAATGAAAA CCTGCAAGAG
  TTAACAGGTT ATTCTACCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38206803	NES09565530	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28079374					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38206803	NES09565530	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87036528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594865	regulatory region 594865			1515 bp proximal
Rr594866	regulatory region 594866			1662 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant