rs28079364 SNP Detail

Summary

• ID
  rs28079364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87038004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTGTGT GACATGCTTT
  CCACTGCCCT TAGCCCTCTA ACTCTCCCAA GGTAAAAATA AAAAACCCCC CACAAAAACC
  AAAAACAAAC AAACAAAAAA GCCAGGAATG GAATTTAGGC TGTGATGGCA CCAAGAGTTT
  ATCTTCCATA CGATAGCAAT AATTATGGGT AAATCTCGTA CTAGGCTGTT ATTCACTCTC
  R
  AGTGCCATTT GGCCTGGCAC TAATGCCCAG TGTTGAAGGC CTGCCTCTTG TGTTAACTGG
  CAAAGCTTTG ATAAAGAGGA AGTGCATGAG AAAGCTGATC TCTGAAAAGG CACACACAGG
  CCGGAAAGGT TCAAGTGGGA GGTTCAGGGC TTTCAAATGC GCTCACGGCT TCCCATGAAA
  GTTAACAGAA CACCAGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
ss38206793	NES09565454	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
rs28079364					SNP	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38206793	NES09565454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87038004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594865	regulatory region 594865			39 bp proximal
Rr594866	regulatory region 594866			186 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant