rs28079362 SNP Detail

Summary

• ID
  rs28079362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87038750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTTTA GTAGGAATGA
  CTTATTCAAA CAAGTAGATA CCCAGGGTGG AGAGGAGGTT CTTAGTAATG ATTTAACCTC
  TTTGTATAGG GGTGTCTACA CCCACCCTCA AATCTTACCT TTCCTCCTGA TACTCACCAC
  AGGCAAGGGC ACTAATGAAG ACATTCAAAT TTCTCCTTGA AATAAAGATA TTGCAGTGTA
  Y
  TTGAGAAATG GAAAAATTCT CAACACGGTG GCCAGGAGTG AAGGTGAAAA AGGACACAAA
  GGGATTTCCA GCCTTCCCCA ACAAAGGTCA AGTTTGTGAG CTACCTGGAG TGGGGAGAAC
  GTTTTCCCCT GGAGAGCAGG GAGCACACCT GGTTAGGCAC CACAGAGGAA CACTCCTCCC
  ATTGCTGTTG GGATTGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
ss38206791	NES09565456	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
rs28079362					SNP	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38206791	NES09565456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87038750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594865	regulatory region 594865			384 bp distal
Rr594866	regulatory region 594866			539 bp distal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant