rs28078493 SNP Detail

Summary

• ID
  rs28078493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97979653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAAAT AGAGAGGGGG
  GTTAGAATTA TCATCTCTTT CAGCTGCAGT TTGAGGTCCG GGAAGTGGAC AGGGCTGTCC
  CCTGATGGAG GACACATCTC TCTGGGTTAT TGTGGACTGA GAAAGCTGTC TGTATAGAGG
  GCATGTGGCT CAGCTCATGC AGGTTCTGTA CACAGTGCCC TCCTGTGCCC CCAAAGTTCA
  Y
  CCAGCTTCCA GAGTCTGAGC CAGGTGCTTC CTCTAGAGAA GAACAGTGCT GGGCTCTGCT
  CGGCCTGAGT CAACAGAGCT TAAAGAACAG GAAACCGAGC CCAGCACCCT CCCTGCAGCA
  TGACCTCCAG GAGGCCACAG CACAGTGGAT TCTCACAGTT CATTCAGCCT TTGCAAGGAA
  AAGCCCAGGA CCAGGAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38245514	NES09534879	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28078493					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245514	NES09534879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97979653 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	within coordinates
Rr595683	regulatory region 595683	1024 bp distal
Rr595684	regulatory region 595684	within coordinates
Rr595685	regulatory region 595685	8 bp distal