rs28078489 SNP Detail

Summary

• ID
  rs28078489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97980169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCAGAAT GAAGGACACA
  CTGTTCCAAG CCAGAGTCCT TGGTCTAAAG TGAGTCTCCA AAGAGCTGCT GACTTCCGCT
  GACTCTTCCT GTCTCCTCAG CCCCTCAGTA CTCTCCCGAA TTTGTACTAA AGATGAAGAG
  AAAATGCTGT CATTAAGAGA CCTCTCTTCT GGGGATATTG CCTCACAATA TGCCCTGTCC
  R
  CTGAAGCACT GTCTTCAGCT TGTGCCTCTC CCCAATCTCC TGACGAAGAC GGTCTCAAAG
  GCCTCTCAGT GCATCCTTGC AGCAGAGCCA AAGTGAGTTA CTGCTGCCCT GATATTTTCC
  ACACACACTC CTGAGGCACA GAGGCTCATG ATCTCTAACA CCTCTTTGCT GGTGTTCATA
  CAAGATTAGC ACAGCCGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38245510	NES09534883	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28078489					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245510	NES09534883	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97980169 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	425 bp downstream
Rr595683	regulatory region 595683	1540 bp distal
Rr595684	regulatory region 595684	within coordinates
Rr595685	regulatory region 595685	524 bp distal