rs28077461 SNP Detail

Summary

• ID
  rs28077461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81040847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAACATT TTATTTATCC
  ATAAATTTCT CAGACAGCAA AAGAATAAAT ATAAGTGTCC ATGTCTCCTT AACTTCTCAG
  CCGTTATTTA AGCTTTGCAT AAAAATATAC AGTCACTAGT AAACTACAAT TGTAACTTTT
  GGCTTTGACC AATTAAGTAA ATGATTTACA ATATCGCAGC CCCAAAATAT TTAGCATCTT
  Y
  CAGCTAATGG GTTTTGCTAA GTGTCTGTAG AATGTTTTGG AGGAAATTAG TGTCAATGAG
  ATGACAAGAA TATCTTTTTC ATCCTCAGTT TTTATGGAGT ATGTGAGCAC ATTCCACATT
  CTTTCTTTCA GGTGCTTGGG AAGTGGATTC TGTGGGCTTC TGCTTCCTCT CTGAGTTCAG
  AATTGCTGCA GTCAGCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38232680	NES09611018	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077461					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232680	NES09611018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81040847 () rs orientation: forward

Symbol	Name	Function Class
Rr594197	regulatory region 594197	1527 bp proximal