rs28077459 SNP Detail

Summary

• ID
  rs28077459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81040969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACAATTG TAACTTTTGG
  CTTTGACCAA TTAAGTAAAT GATTTACAAT ATCGCAGCCC CAAAATATTT AGCATCTTTC
  AGCTAATGGG TTTTGCTAAG TGTCTGTAGA ATGTTTTGGA GGAAATTAGT GTCAATGAGA
  TGACAAGAAT ATCTTTTTCA TCCTCAGTTT TTATGGAGTA TGTGAGCACA TTCCACATTC
  Y
  TTCTTTCAGG TGCTTGGGAA GTGGATTCTG TGGGCTTCTG CTTCCTCTCT GAGTTCAGAA
  TTGCTGCAGT CAGCTGTAGA TTTCAACTGT TCTACACCTA GGAAATAGTC TTGAAATCAA
  ATTACTAGTT ACCTTTTTTT AATGTAATAT GCATCTCTTA AGAGGATCTA CATCAGTGGG
  AGGGGAGGCA CTTGGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38232678	NES09611020	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		T	T	T	T	T	T	C	T
ss45568617	mCV23997993	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss146846109	ENSMUSSNP6639238	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077459					SNP	T	T	C	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232678	NES09611020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81040969 () rs orientation: forward

Symbol	Name	Function Class
Rr594197	regulatory region 594197	1405 bp proximal