rs28077455 SNP Detail

Summary

• ID
  rs28077455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81042176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGAGCT GGCTTGAGTT
  TTTCTCAATA GGGATTTCAT AGTTCTTGCT TGCATTTCAT TCAAGTGCAT GTCAAGCTAG
  CTGAGGAACA GTGAGACCTA TCTGCAGAGT GCATACCCTT CCCTCAGTGG CATCTATGCC
  ACCTCCCCTG GGATGACAAG CAATGCTTAA AGAAATATGG AGTCAAAAGA GTTCAAAATA
  Y
  TTATTTCCTG CATATTCATA ATGACAGATA TCTACTTTAA AAATACTTTT TAACCCCTGA
  AACAGACTAG TTTGATAGAG GAACACTGTC TCAGAGACTT TAATTACTAA CTGTGTCTTA
  AAATTATTGT AACACATTTC ATCAGAAAGC TCAAAGGATT TCTAAGGGTA AGCTTGCCCA
  GAGTGGAATA ACAATAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38232674	NES09610993	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C	C	C	C	C	T	C	T	C
ss146846174	ENSMUSSNP1348014	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28077455					SNP	C	C	T	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232674	NES09610993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81042176 () rs orientation: forward

Symbol	Name	Function Class
Rr594197	regulatory region 594197	198 bp proximal