rs28077447 SNP Detail

Summary

• ID
  rs28077447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81043744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTGTGT TGGAGCTCTG
  CTTCACATTT ATTATATATC CTTTCCCAAA AGCCTCCTGA ATTTGTGTTT TTGCCCTCCT
  CTTCAAATTC TAATAGCCCT TCTCTGATTG GTCACATTTT TATCTTATTT GTAGGCATGC
  ACATTCAGGA AGTCAGGGTC CTACCTATCC TGAATATCTG AGGTGATAAG CTACAGAGAA
  R
  TAGTCTCATC AGAGCACTGG TTGGACAAGA CAGAGAAGGA AGACTTCAAA ATTCAGCTCA
  CAGCTGGTCC TGGCCAGTGA CCTACCCACC AGAAAATAGA GAGAGAAGAC TGCTTCAAAG
  AGTGTTGGAG AAGATCTCAC TGGAGGCTCA TGGTGCCAGA GTCTTCTGAC CCAAGGAGAG
  AACATGCTAG GGGCTAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38232666	NES09610898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28077447					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232666	NES09610898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81043744 () rs orientation: forward

Symbol	Name	Function Class
Rr594197	regulatory region 594197	876 bp distal