rs28077429 SNP Detail

Summary

• ID
  rs28077429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81046349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCCTTA TTATGCTTCC
  CATTCTGTTC TTGAAAGTAG GGCAGGACAA ATACCCCAAA TCAGAGAATC AGCTGACTCA
  CGGCCAGGTT GAGGTGCTGC CTCTCATTGT ACACGGGGAA AAGCAGAGAG ATTGCCACTA
  ACACAGAAAA TGAAGTCAGA TTTGGGAAGA AATGGAGATG ACAGTGAGAT GAAATGGAAT
  Y
  AGTGAGATGG GATGGCAGAC CCCACATGAG TGGAGTTTAT GCTCATGCCT TTACTATGTT
  TGATCTATTT CATTCCTATC GGGTGAGCTA TATTTGTGTT CTCTCTCTCT CTCTCCCTCC
  CTCCCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTTAATTG AGCTAATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38232648	NES09610799	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28077429					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232648	NES09610799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81046349 () rs orientation: forward

Symbol	Name	Function Class
Rr594198	regulatory region 594198	1687 bp proximal