rs28077428 SNP Detail

Summary

• ID
  rs28077428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81046552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATGGGA TGGCAGACCC
  CACATGAGTG GAGTTTATGC TCATGCCTTT ACTATGTTTG ATCTATTTCA TTCCTATCGG
  GTGAGCTATA TTTGTGTTCT CTCTCTCTCT CTCCCTCCCT CCCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTTAATTGAG CTAATTTGAC
  Y
  TGAAGCTTTG CATTTGTAAC AAAAAGAGAC ACTGTTTAGT TATGGCCTCT CAAAGCAGGT
  GGCACAAAAA CCCTATCGTG ACACAGACAG ATTACATGCT GGAAGAAGTT GTGGAGGGCT
  AGTGGGATGC AGTTATTTTA ACTTCTTCCA GAAAGGAGAC CTAAACATCA GAGGGGACTC
  TGCAGCTCAG ACTGCAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38232647	NES09610742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28077428					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232647	NES09610742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81046552 () rs orientation: forward

Symbol	Name	Function Class
Rr594198	regulatory region 594198	1484 bp proximal