rs28077422 SNP Detail

Summary

• ID
  rs28077422
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81048519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTAGT CTTAAAGTAC
  AATAATTTTA AACAACACGT GACATCCTCA AACACCCACG CAGTCCAAGT GTGACCTCAG
  GTTTAAAAGA AAAGCCTCAG GAGCTACAAA ACAATAATGA CCAAAACTGG CCAAGGAGTT
  GATTGCCAAT GAAGCAGCAG GGAATCTTGG GTAGATTTTG CTTTTTGCCA AGAAGCCCCA
  M
  GTTTATTTTT CATTCTTCAG GCATACAGCT TTTTTATTGT TGTTGTTGTT GCTGCTGCTG
  CTGCTGCTGT TGCTGTTGTT AATTAATCAT CGGTTTATTT TGATTGCAGG TAAATGCCCT
  TAAAAGAATC TGGAAGAGTG ATATGAATTA AATATATCAC ATAGAATGGT TCAGATTCAA
  AGGACTTTTT ACTACATCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38232641	NES09610706	PERLEGEN	MM_PANEL2	f	SNP	A			A	C	A	A		A	A	A	C	A	C	A
ss45581009	mCV23076015	ABI	CRAMUS_MOUSE	f	SNP		A	C					A	A
ss45696725	mCV24382132	ABI	CRAMUS_MOUSE	f	SNP			C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28077422					SNP	A	A	C	A	C	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38232641	NES09610706	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81048519 () rs orientation: forward

Symbol	Name	Function Class
Rr594198	regulatory region 594198	57 bp distal