rs28077166 SNP Detail

Summary

• ID
  rs28077166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88769448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTTAT GTTGTGTATA
  CTGGTATTTT TCAGTAAAGA AATTATATAC ATAATCAAGC TTCCAAGTAT TGTAGTTACA
  TATGACATTG CATAGTGTTC AGGCGATTAG ATTTATTTCT CATCCATTCA TGGTTAATTC
  CTACGTCTTT TCTTTTCTCC TGTGTATTGT ATTCTTCTGA ATGCCCAGAC AACACACTGT
  K
  CAGGGATCAG GCATAAGATC TTGCTCCTGT CAAACTGTGT AAAGGGATCG GTATTTCTAC
  AAGACACTCC ACAACCATGT TCTTAGCACA AAGGTCATTT ACCTGACCTG GAAAGACAAA
  GGACCAAGAA TAAGACAAGG ACAGGCGATA GAGGACTAGG GAGAAGGGGA AGGGAAGAAG
  GAAGAAGGGG AAGAGATACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38237689	NES09568121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077166					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237689	NES09568121	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88769448 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	260 bp distal
Ifna1	interferon alpha 1	555 bp downstream
Rr595123	regulatory region 595123	within coordinates