rs28077165 SNP Detail

Summary

• ID
  rs28077165
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88769482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAAATT ATATACATAA
  TCAAGCTTCC AAGTATTGTA GTTACATATG ACATTGCATA GTGTTCAGGC GATTAGATTT
  ATTTCTCATC CATTCATGGT TAATTCCTAC GTCTTTTCTT TTCTCCTGTG TATTGTATTC
  TTCTGAATGC CCAGACAACA CACTGTTCAG GGATCAGGCA TAAGATCTTG CTCCTGTCAA
  W
  CTGTGTAAAG GGATCGGTAT TTCTACAAGA CACTCCACAA CCATGTTCTT AGCACAAAGG
  TCATTTACCT GACCTGGAAA GACAAAGGAC CAAGAATAAG ACAAGGACAG GCGATAGAGG
  ACTAGGGAGA AGGGGAAGGG AAGAAGGAAG AAGGGGAAGA GATACTGTCC TGGGGGTGGG
  AGCACAAAGG ACTCCCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38237688	NES09568122	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077165					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237688	NES09568122	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88769482 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	294 bp distal
Ifna1	interferon alpha 1	589 bp downstream
Rr595123	regulatory region 595123	within coordinates