rs28077107 SNP Detail

Summary

• ID
  rs28077107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88785034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTAAGC ACCTAAAGAG
  AATGTGGGTG GTTTTCAGGA TGACTGGGAC CTAGGAGTGG GGATGGAGAT AGCATAGTTG
  ACCTCAGTTT AAAAATGTGG GCAGAGGGCG AAGTATTAAT CCCAGCCTTG TGGCTCCTTT
  AAAGTACAGC CACGTGCCCC GAGTAGATGT GTTTAAGGAC AGAAGACACC AGAGATCATT
  Y
  ACCAGGAGCC AGCAGGCTCT GCTGTAAGTT ACACAACAGT GAGCAAAAAT CTCATTCCAA
  GAAAGTTTCT TGATGCAGGT AGTGTATTAA ATCCCTAAAT TTGGAATGCT GAGGAGGGAG
  GGGAGGATTT CTGAAAGTTC TAGGTCAGCT GGAGATGTTG AGGAAGATGT TGATTTTTAA
  AAAAGATACC ACCCAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38237630	NES09567505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077107					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237630	NES09567505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88785034 () rs orientation: forward

Symbol	Name	Function Class
4930553M12Rik	RIKEN cDNA 4930553M12 gene	436 bp downstream
Cpgi14432	CpG island 14432	1277 bp proximal
Gm69755	predicted gene, 69755	1649 bp upstream
Rr376804	regulatory region 376804	1849 bp downstream
Rr398331	regulatory region 398331	429 bp upstream
Rr595125	regulatory region 595125	1312 bp distal
Rr595126	regulatory region 595126	480 bp proximal
Rr595127	regulatory region 595127	741 bp proximal
Rr595128	regulatory region 595128	1573 bp proximal
Rr595129	regulatory region 595129	1660 bp proximal
Tssr37771	transcription start site region 37771	1677 bp upstream