rs28077100 SNP Detail

Summary

• ID
  rs28077100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88786065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAACATT TGTGCTCCTG
  GGCCAAATAA AAATTTCCCC TTCCTAGTGT CTGAAGGAGA GAAGGGACTT CAGATTCCCC
  CAAGGCACAG TGATCGCCGG ATTCAGAAGT CCCATGGTGG AAGAGTGAAC CAACTCCTGA
  ATACTGTCTT CTGCTTGTCA TATGTATGAC ATGATGCATG TGTTCACACA CTTACATGAA
  Y
  AAATATACAA ACACTAAGAA CGAAGGGATG GGGCTCTTGG AGCAGAAAGT GCATTAATGT
  CCCCTGAATG TTATTTTGGT ATCTTTCCTG TATATTCTCT CTAGTGAGTC CTCTACAAAC
  TGAGCTGTCT CAGAATACCA AAGTGTTTGT CTGCTGAGTG TCACAGGGCG CTCTGCTTGT
  TGAAGCTGGA ACCGCGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38237623	NES09567332	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28077100					SNP	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237623	NES09567332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88786065 () rs orientation: forward

Symbol	Name	Function Class
4930553M12Rik	RIKEN cDNA 4930553M12 gene	within coordinates
Cpgi14432	CpG island 14432	246 bp proximal
Gm69755	predicted gene, 69755	618 bp upstream
Rr398331	regulatory region 398331	302 bp downstream
Rr595126	regulatory region 595126	within coordinates
Rr595127	regulatory region 595127	269 bp distal
Rr595128	regulatory region 595128	542 bp proximal
Rr595129	regulatory region 595129	629 bp proximal
Tssr37771	transcription start site region 37771	646 bp upstream