rs28076002 SNP Detail

Summary

• ID
  rs28076002
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75885261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAATGTG TTCTCTAGCC
  TTGGCTATGA AGTCTATGCC AATTGGGCAA CTTGACATTG CCCTTGTTAG TGGACTGGAA
  CCCTTCTTAT AGAGGAAAAC AATGGGACTA GAATAATAAT AACCTATAAA CAGCAAACAC
  ACCGCATTGG AGAAGAACAA TGGTTCACTG TATTCTACTC TCTGTTTCTT CTCTACATTT
  M
  TCCCTCCACA AACCACTGGG CATGGAGGAG ATGGACTGAC TAAACAGGAG CAAGCACTCC
  TTAGTAGGGA ATCCATTAAG GAAAATGTAC TTTTCATCAA TACCAGAGAC ACTATATTTA
  TGCTTTTATC TCTGACAACA TAAATAACTT CTCTTCACAG ATAGAACTAT CTCAGATACT
  GGGAATCACA GAATACTTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38197336	NES09604102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28076002					SNP	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38197336	NES09604102	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75885261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594060	regulatory region 594060			1653 bp proximal