rs28073600 SNP Detail

Summary

• ID
  rs28073600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:74796901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGTAGG AATTGCCAAG
  ACTAAAATAG AAGATGAATT GTATTACTGT CAGTAGCACA CAATAAATGA TTAAAGAATA
  TCAAAAGAGG AAAATGATTG CTTCTGACTG CAGATTCCAG AGAAGGTGAT GCTAGAAGTG
  GGTCATTTGA AAGAATTCAA GCTCCATAGA CAAGAAATTA ATGATTAGGT TCCCCAGGGA
  W
  AAAAGCAAGC AGAAGTAAAG TAACTCTAGT CTTTAACTCA CTTGGAAAAA TACAAGTCAT
  GATATGGCTA AACAGTAGGA AAGTAATGAT GAAGACTGAA AAGATTCACC TACATATTGA
  ATCCATGTAA GGTACACACA CACACACACA CACACACACA CACACACACA CACATATATG
  TATTATATAT ATTGCCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38199721	NES09610289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28073600					SNP	T	T	T	T	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38199721	NES09610289	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74796901 () rs orientation: forward

Symbol	Name	Function Class
Rr594034	regulatory region 594034	566 bp distal