rs28073598 SNP Detail

Summary

• ID
  rs28073598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:74797222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATGTAA GGTACACACA
  CACACACACA CACACACACA CACACACACA CACATATATG TATTATATAT ATTGCCTTCT
  ATTGAGCCTT CCTTTGCAAG TCCAAAACCA AAGCTTGACA CCTATGATTC TTTCAGATCT
  TTGATAAAAT GTACAAATTG TGTTCTACCA GAAGACATGG GAAGTGTATG AACAACAACG
  Y
  CCATCTTCCT ACTTCTAAAA GTAACTCTTA TTGACCTGAA GTAATTATCG TCTCAGAGGC
  TTACTGCTGT ATAAACCCAT CATTTCTAGC TCTTTTATGA ACTCTAGATA GCTGATTCAG
  CTCAGCTGTT TTAGACCAAA TTCCTCTCCA TTTTGACTGA TTCAAATGGG CGTTTTTTTT
  TTTTGGCTTC TGATTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38199719	NES09610291	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28073598					SNP	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38199719	NES09610291	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74797222 () rs orientation: forward

Symbol	Name	Function Class
Rr594034	regulatory region 594034	887 bp distal