rs28073121 SNP Detail

Summary

• ID
  rs28073121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89045002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTACATA TAAACAGTCA CTAATTATCA TGAAGCATTT
  GTTAAAAGAT TAAAGCAGTT TATTATATCT TCCTTCAATT TATCATCTCT TCCTCCAATT
  W
  ATCCTCTAGA CAAAAATATA AATCAGAAAA CTGCAGAATC TACTTGCTAA AAACTATCCA
  TGTCTTGCAT ACCCTGTGGA ATTAAAGCAG AGCTCTTTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38236541	NES09555366	PERLEGEN	MM_PANEL2	f	SNP	T		A		T		A	A		T	A	T
ss45625207	mCV23150977	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A		T
ss146946510	ENSMUSSNP6921527	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A			T
ss321204642	CHEV_4_88772669	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28073121					SNP	T	T	A	A	T	T	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236541	NES09555366	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89045002 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr595153	regulatory region 595153	1196 bp proximal
Rr595154	regulatory region 595154	1427 bp proximal
Rr595155	regulatory region 595155	1476 bp proximal
Rr595156	regulatory region 595156	1822 bp proximal
Tssr42402	transcription start site region 42402	209 bp upstream
Tssr42403	transcription start site region 42403	1452 bp downstream