rs28073110 SNP Detail

Summary

• ID
  rs28073110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89046427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGTTCT GGAACTCACT
  ATATAGACCA GGCTTCTCTT GAACTCAGAG ATCCCCCTGC CTCTGGGATC GAAGGGATAT
  GTCAGCACCT CCGGCCATAA TCACAACTCT CCATGCAGCT CATGCGACAG CACCAATGTA
  CCCACCACCA CCACCATCGT GACATGCACT TACCAAGTTC CAAGTGTCTC ACACTAGCTC
  K
  GAGGACTCAC CCTAGTCTCA CAGATGAAGG AACAAATGTG ATGGCATGCC ATAGCCAATA
  GAGGGCACCC GAGACCCCAG TCCCAGCCCA GGCGCAGGGA TCAGATTTCC ACAGGCAGCA
  GTGAGTCAAA TCCAATCCAA AGTTCACTCC CTAGTACCCA GTCATTCTTC AACACTGCAT
  CTCTTTCCTT AGCGTCTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38236530	NES09555226	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28073110					SNP	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236530	NES09555226	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89046427 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	1081 bp upstream
Rr595153	regulatory region 595153	within coordinates
Rr595154	regulatory region 595154	2 bp proximal
Rr595155	regulatory region 595155	51 bp proximal
Rr595156	regulatory region 595156	397 bp proximal
Rr595157	regulatory region 595157	1013 bp proximal
Rr595158	regulatory region 595158	1227 bp proximal
Rr595159	regulatory region 595159	1487 bp proximal
Tssr42402	transcription start site region 42402	1634 bp upstream
Tssr42403	transcription start site region 42403	27 bp downstream