rs28073108 SNP Detail

Summary

• ID
  rs28073108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89046486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGGAT CGAAGGGATA
  TGTCAGCACC TCCGGCCATA ATCACAACTC TCCATGCAGC TCATGCGACA GCACCAATGT
  ACCCACCACC ACCACCATCG TGACATGCAC TTACCAAGTT CCAAGTGTCT CACACTAGCT
  CGGAGGACTC ACCCTAGTCT CACAGATGAA GGAACAAATG TGATGGCATG CCATAGCCAA
  Y
  AGAGGGCACC CGAGACCCCA GTCCCAGCCC AGGCGCAGGG ATCAGATTTC CACAGGCAGC
  AGTGAGTCAA ATCCAATCCA AAGTTCACTC CCTAGTACCC AGTCATTCTT CAACACTGCA
  TCTCTTTCCT TAGCGTCTTT CAGTTGGCAA TCAAATGCAA GCCTAAGCAA GAGCCTTCTC
  CGCAGTGATT TTATGAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38236528	NES09555228	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28073108					SNP	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236528	NES09555228	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89046486 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	23 bp upstream
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	1022 bp upstream
Rr595153	regulatory region 595153	58 bp distal
Rr595154	regulatory region 595154	within coordinates
Rr595155	regulatory region 595155	within coordinates
Rr595156	regulatory region 595156	338 bp proximal
Rr595157	regulatory region 595157	954 bp proximal
Rr595158	regulatory region 595158	1168 bp proximal
Rr595159	regulatory region 595159	1428 bp proximal
Tssr42402	transcription start site region 42402	1693 bp upstream
Tssr42403	transcription start site region 42403	12 bp upstream