rs28073101 SNP Detail

Summary

• ID
  rs28073101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89046828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGCCTGA TTCAGACTTG GAAAAAACAG GCATGAGAGG
  CCTGACCCTC TGATAACCCC GCTAGGCAGT TTCTCGTGCA AACAGCAGTT TAACCAAATA
  Y
  GCCCTCTTGT TTTTTCTAGC GCTCTTTGTC ATTGCAGTGA AATCCAAGTT GGGCTTCCCG
  TGAGAAATCA AGCAGCAAAG ACTGGGAGAT TTTGGTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38236521	NES09555235	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T		C	T		T	C	T
ss146946550	ENSMUSSNP7167956	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss321204651	CHEV_4_88774495	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28073101					SNP	T	C	C	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236521	NES09555235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89046828 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	365 bp upstream
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	680 bp upstream
Rr595153	regulatory region 595153	400 bp distal
Rr595154	regulatory region 595154	within coordinates
Rr595155	regulatory region 595155	329 bp distal
Rr595156	regulatory region 595156	within coordinates
Rr595157	regulatory region 595157	612 bp proximal
Rr595158	regulatory region 595158	826 bp proximal
Rr595159	regulatory region 595159	1086 bp proximal
Tssr42403	transcription start site region 42403	354 bp upstream