rs28073095 SNP Detail

Summary

• ID
  rs28073095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89047430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACTGTCT TTCTCTGGCT AACACTGGTG AATTAATTGG
  TCACAATCTG ATAAAGGAGT GTTCTAAAAG TTCATGGAAA AACATTAATG ATGTCCGTCA
  R
  TCACAACTTG ACCTTCGAAC ATTTTAGCTG TCACTTGCTT CAAAATGAAT TATGTACTTG
  TGGTTAAAAT TCGACACCCC TTTGTTTTGC ACTTGCAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38236515	NES09555243	PERLEGEN	MM_PANEL2	f	SNP	A		G		G		G	G		G	A	G	G
ss45577644	mCV23150968	ABI	CRAMUS_MOUSE	f	SNP		A	G	G		A
ss146946554	ENSMUSSNP93829	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
ss321204652	CHEV_4_88775097	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28073095					SNP	A	A	G	G	G	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236515	NES09555243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89047430 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	967 bp upstream
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	78 bp upstream
Rr595153	regulatory region 595153	1002 bp distal
Rr595154	regulatory region 595154	393 bp distal
Rr595155	regulatory region 595155	931 bp distal
Rr595156	regulatory region 595156	585 bp distal
Rr595157	regulatory region 595157	10 bp proximal
Rr595158	regulatory region 595158	224 bp proximal
Rr595159	regulatory region 595159	484 bp proximal
Tssr42403	transcription start site region 42403	956 bp upstream