rs28072818 SNP Detail

Summary

• ID
  rs28072818
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81246611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGCAT GTCTTTGAAA
  CAAGCTGGGG GTGGGGGCTG TGGGAAGGTA AGCTCTTGCT GCTGCAGCTT CCTCCTCTGT
  AAGATGTAGA CTGCTTTTTG CAAGCATCCT GCTGATAAAA ACAAACATGC TTTCTTTGCT
  GAAAAACTAA TGGCATTTCC TTCTCTGTGC TGAGAGTAGA GAACAGCAAT AAAAGTAGCT
  S
  CTTCTTCCTA AAACTTTTCA ATGTTTTAAG GCCCATGCGC GTACTGACAG GTTAACTGGT
  CCTCCATTTA GACAGAAGAA AGAGAGCTTT TCCCATTTTG ACAAAAACAC TGGGACACTA
  CAGTCAGCCC ACGCTAAGAA GCCCGAGATA GGAATTCTAG AGTGCACCTG GGCCAACTTT
  TGCACAGGGT GACATGCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38231537	NES09603727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28072818					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38231537	NES09603727	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81246611 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			1205 bp proximal
Rr594212	regulatory region 594212			1278 bp proximal
Rr594213	regulatory region 594213			1362 bp proximal
Rr594214	regulatory region 594214			1530 bp proximal
Rr594215	regulatory region 594215			1628 bp proximal
Rr594216	regulatory region 594216			1712 bp proximal
Rr594217	regulatory region 594217			1768 bp proximal
Rr594218	regulatory region 594218			1838 bp proximal
Rr594219	regulatory region 594219			1880 bp proximal
Rr594220	regulatory region 594220			1992 bp proximal