rs28072815 SNP Detail

Summary

• ID
  rs28072815
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81246729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAT GCTTTCTTTG
  CTGAAAAACT AATGGCATTT CCTTCTCTGT GCTGAGAGTA GAGAACAGCA ATAAAAGTAG
  CTCCTTCTTC CTAAAACTTT TCAATGTTTT AAGGCCCATG CGCGTACTGA CAGGTTAACT
  GGTCCTCCAT TTAGACAGAA GAAAGAGAGC TTTTCCCATT TTGACAAAAA CACTGGGACA
  S
  TACAGTCAGC CCACGCTAAG AAGCCCGAGA TAGGAATTCT AGAGTGCACC TGGGCCAACT
  TTTGCACAGG GTGACATGCT CCTACCATAA ATGTCCTGAG TCACAAAGTA CTGGAATATT
  CTTTTTCTTT CTAAACACAG ATTACGTCTT TACATTCCCA AGTGCTCTCT GCAAACTGTG
  GGCCTTGCAT AATTTGCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38231534	NES09603730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28072815					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38231534	NES09603730	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81246729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			1087 bp proximal
Rr594212	regulatory region 594212			1160 bp proximal
Rr594213	regulatory region 594213			1244 bp proximal
Rr594214	regulatory region 594214			1412 bp proximal
Rr594215	regulatory region 594215			1510 bp proximal
Rr594216	regulatory region 594216			1594 bp proximal
Rr594217	regulatory region 594217			1650 bp proximal
Rr594218	regulatory region 594218			1720 bp proximal
Rr594219	regulatory region 594219			1762 bp proximal
Rr594220	regulatory region 594220			1874 bp proximal
Rr594221	regulatory region 594221			1930 bp proximal