rs28072811 SNP Detail

Summary

• ID
  rs28072811
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81248799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGTCTG CCCACTAGTG
  TCTGCCCACT CGTGTCTGCC CACTCAAGTC TGCCCACTCA TGTCTGCCCA CTAGTGTCTG
  CCCACTCAAG TCTGCCCACT CAAGTCTGCC CACTCGTGTC TGCCCACTCA AGTCTGCCCA
  CTCATGTCTG CCCACTCAAG TCTGCCCACT AGTGTCTGCC CACTCAAGTC TGCCCACTCA
  W
  GTCTGCCCAC TAGTGTCTGC ACTTCTTATG GTATGGAGAA TGAGCATATT CAACATACAA
  TCCAAATTTC AAGACAAAAT ACTCTATGGG CAAACACAAC CACTGAAATA AAAATTGTAA
  ATGCTACTGG GAAAGTACTA ATGGGGAAGT AGAATCATTT GTTTCTCCAA ACAAGTAAGT
  TGCTGTAACA TTTTTGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38231530	NES09603734	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28072811					SNP	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38231530	NES09603734	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81248799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			within coordinates
Rr594212	regulatory region 594212			861 bp distal
Rr594213	regulatory region 594213			805 bp distal
Rr594214	regulatory region 594214			609 bp distal
Rr594215	regulatory region 594215			539 bp distal
Rr594216	regulatory region 594216			455 bp distal
Rr594217	regulatory region 594217			399 bp distal
Rr594218	regulatory region 594218			329 bp distal
Rr594219	regulatory region 594219			287 bp distal
Rr594220	regulatory region 594220			175 bp distal
Rr594221	regulatory region 594221			119 bp distal
Rr594222	regulatory region 594222			1847 bp proximal