rs28072807 SNP Detail

Summary

• ID
  rs28072807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:81249955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGAGAC TCTTAAAATA
  GAATACATCC ACTAAGATGA GTTCAAAAGA TCCTGACATT GAGTCAGAGG CATTCAGTCT
  TTCATGTCTT CTACGTGCAA CTTCATGGGT TTGAGGTGCT CTGAGGCAAG ACAACACTGC
  TGAACCTTGA ATGTTTCAAC CACAAGCATG TCATCATTTA TTAGGCAGTC ATTAGCAACA
  Y
  GCCACCAGAC AGTGAGGCAG GCAGGATTCT CTCAGAACAC AGCTGGCTGC AGTACAGGAG
  CCCACCAAAA AAACCCACTC AACCCCCCAG GAATCTCCTT GAGACAATTC TACCTCCAGG
  ACCAAACTTT GAGCAGAAAA GAGTGGTTAT AGAAATTTCA CTAGGCACAG TGAAAGCATT
  TCTTTCACTG GCCCAGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38231526	NES09603587	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28072807					SNP	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38231526	NES09603587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81249955 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mpdz	multiple PDZ domain crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr594211	regulatory region 594211			1113 bp distal
Rr594213	regulatory region 594213			1961 bp distal
Rr594214	regulatory region 594214			1765 bp distal
Rr594215	regulatory region 594215			1695 bp distal
Rr594216	regulatory region 594216			1611 bp distal
Rr594217	regulatory region 594217			1555 bp distal
Rr594218	regulatory region 594218			1485 bp distal
Rr594219	regulatory region 594219			1443 bp distal
Rr594220	regulatory region 594220			1331 bp distal
Rr594221	regulatory region 594221			1275 bp distal
Rr594222	regulatory region 594222			691 bp proximal