rs28072032 SNP Detail

Summary

• ID
  rs28072032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81843253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GTATGTTTTT AATGAAACCA
  Y
  AGTTCACTTA CAGTGCTTAT TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss38229654	NES09599043	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C	C		T	C	T
ss146855098	ENSMUSSNP2698343	ENSEMBL	ENSEMBL_Sanger	f	SNP					T
ss321185185	CHEV_4_81570920	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs28072032					SNP	C	T	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229654	NES09599043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81843253 () rs orientation: forward

Symbol	Name	Function Class
Rr594263	regulatory region 594263	686 bp distal
Rr594264	regulatory region 594264	1668 bp proximal