rs28072031 SNP Detail

Summary

• ID
  rs28072031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81843296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAAAAC ATCAATGAGA
  ATTTTTTTCT GTTTGCTTTG TTTGTATGTT TTATAGGATG TAACGCCCTT TCTCCTCTAT
  TGCAAACTCT ATACCCAGTC CTTTCTCACA TCATTCAGCA TGTGTGCATG TGTGTATGTA
  TGTTTTTAAT GAAACCACAG TTCACTTACA GTGCTTATTT CTGAGTCATG CAAAAGCCAT
  Y
  GAAGTCCTTT AAGGTCATGT GCTCCTGGAA GCATCAAGAA GAACAAGTTT CCTATACTCC
  TTAGAGTACT GGACACACTT AAATGCTTAA TACACTTCAA ATAACAAAAT CAGTACACTT
  CATAAAATAA GCACATAAGA TATACAAAGA TTTGGCTAGC TTCAGTAAAC TATGGGGTCC
  CTGTATCTCC TATATTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38229653	NES09599044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28072031					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229653	NES09599044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81843296 () rs orientation: forward

Symbol	Name	Function Class
Rr594263	regulatory region 594263	729 bp distal
Rr594264	regulatory region 594264	1625 bp proximal