rs28072025 SNP Detail

Summary

• ID
  rs28072025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81843950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTTCGC TCACTCTCTG
  TCTCTTTTTA TGAAGTTTCC TGCACATAGC AATAAAAAGA AGGAAGAGGG CATGAAGGGG
  AGAAAGAGAT AATGAAGATA GTGAAGAGGA GAGATGAAGA GAGGGGAGAG GGAGAGATGA
  AGGGGGAATG GGGAGAAAGA GAAGGAGATG GAGAAAGAGA GAGAGAGAGA GGCTATAAAT
  R
  TGGGCCAGTA CCTAATTATA ATTCAAGACA TCCACAATTT AATAAAAACA AGTCCTCCAG
  AATGCAGCCA TAAGGAAAGA GTTTCCACAA TCTGTTCATC TGCATAATTA GTGATTGAGG
  ACCTGGGAAC AGTTGGAACA TTGCTGAGGA AGGCCCAGGT CACATTATTG ATAACATAAA
  TAACAAAGAT ACAGATTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38229647	NES09598821	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28072025					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229647	NES09598821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81843950 () rs orientation: forward

Symbol	Name	Function Class
Rr594263	regulatory region 594263	1383 bp distal
Rr594264	regulatory region 594264	971 bp proximal