rs28072024 SNP Detail

Summary

• ID
  rs28072024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81843984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTGCA CATAGCAATA
  AAAAGAAGGA AGAGGGCATG AAGGGGAGAA AGAGATAATG AAGATAGTGA AGAGGAGAGA
  TGAAGAGAGG GGAGAGGGAG AGATGAAGGG GGAATGGGGA GAAAGAGAAG GAGATGGAGA
  AAGAGAGAGA GAGAGAGGCT ATAAATATGG GCCAGTACCT AATTATAATT CAAGACATCC
  R
  CAATTTAATA AAAACAAGTC CTCCAGAATG CAGCCATAAG GAAAGAGTTT CCACAATCTG
  TTCATCTGCA TAATTAGTGA TTGAGGACCT GGGAACAGTT GGAACATTGC TGAGGAAGGC
  CCAGGTCACA TTATTGATAA CATAAATAAC AAAGATACAG ATTTCCCCAA ACTACAAACA
  TCAGAATGTA ACTAACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38229646	NES09598822	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28072024					SNP	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229646	NES09598822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81843984 () rs orientation: forward

Symbol	Name	Function Class
Rr594263	regulatory region 594263	1417 bp distal
Rr594264	regulatory region 594264	937 bp proximal