rs28072016 SNP Detail

Summary

• ID
  rs28072016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81844785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTTCTC CATTATAAAA
  CTATGCACTT CTTATCTTGA AAAGGGCTCT GAGAGAGAGG AGAGCAGAGT GTGGTCTACT
  CCGCTATCCA TCCACTGCAT TTCCACTTCT TCCCTTAGGA CTGAGATGCA CCGGAGTCAG
  CAGTATTTGG AATGAGCTAA CAAGAGTCAA AGCACACTGA AAAGGAAGAG AAAGGCAAGA
  S
  TCATTTCAAG TTCTACGTCT CAAGTACAAT CATCGGCTTT TGATTCTAGC ATAGGGTTTA
  TATATATAAA GACATAATGT ATGAATATCT ACAAAACAAA TATTAGCTAC AGAGAGGTCA
  CAGGTCATAG ATCCGCTGAG CATGCATGAC CTGAGAGTCC CAGAGAACCC ACATTAAGAC
  GTGCGTGTGT AAACATAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38229638	NES09598835	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28072016					SNP	C	G	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229638	NES09598835	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81844785 () rs orientation: forward

Symbol	Name	Function Class
Rr594264	regulatory region 594264	136 bp proximal