rs28072012 SNP Detail

Summary

• ID
  rs28072012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81845419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTTTAT GCTTTCAGGC
  TCTGAAAACC ACATGCATAC CTGTGGTTTT GAAATATCCT TAGGACAGCA GTGGGGACGA
  TCTTGTCTAA CTGGATGAAT GAGATGAAAG AAAAGCTTGT CCTTTCACTG GGAAATTAAG
  CCATTCATGT AGAACTGTAA TAATTGTACG TTTCCTTATA GGGCAGGAGG CCTTGAAAGC
  Y
  TAAACTTGCT GTTATTCAAA AAGGGAAAGC TATCAGGAGG CTTTGCACTC TGAATTAAGC
  AATGCATGGT TAACCTATGA AATACTTCTG TTCCATGAGT TCTTGGCCAG CTTGTTCGAC
  TCACTCTGCT TGCTCCTATG AGCCTTATGT TCTTCTAAGG TCTGGAGTTA ATGGGTAAGT
  AAGGCAGACA AGATATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38229634	NES09598839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28072012					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229634	NES09598839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81845419 () rs orientation: forward

Symbol	Name	Function Class
Rr594264	regulatory region 594264	within coordinates
Rr594265	regulatory region 594265	1478 bp proximal