rs28072010 SNP Detail

Summary

• ID
  rs28072010
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81845541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACTGGG AAATTAAGCC
  ATTCATGTAG AACTGTAATA ATTGTACGTT TCCTTATAGG GCAGGAGGCC TTGAAAGCCT
  AAACTTGCTG TTATTCAAAA AGGGAAAGCT ATCAGGAGGC TTTGCACTCT GAATTAAGCA
  ATGCATGGTT AACCTATGAA ATACTTCTGT TCCATGAGTT CTTGGCCAGC TTGTTCGACT
  S
  ACTCTGCTTG CTCCTATGAG CCTTATGTTC TTCTAAGGTC TGGAGTTAAT GGGTAAGTAA
  GGCAGACAAG ATATCCCTGC TCCAGGCAAC TCAAGAACCT GTGAGAAAGC ACTCACAGGC
  TGGTGCTTCA CCAGTCCTGA CCTTCTGGAA GTGAAACTGA GGGGCTACGA CTCTGAGGTG
  GTAAAATCCT GCTGTCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38229632	NES09598841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28072010					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229632	NES09598841	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81845541 () rs orientation: forward

Symbol	Name	Function Class
Rr594264	regulatory region 594264	within coordinates
Rr594265	regulatory region 594265	1356 bp proximal