rs28071998 SNP Detail

Summary

• ID
  rs28071998
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81846152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCACAG TATACTTTAG
  AAAACTATGG CCAGGCTATA CCTTTAAGTG GGTGACAAAG TTGGATTGAA TGTAGCAGTT
  CCCAGACTCA TGGGTTTCAT AGGTGGTCAC AGTTAAAATA CAACAACAGC ATGGAAGAGG
  CCGCCCTCCA GGTGCCAACT TTTAACTTCA AGCAGATACA TTTTAAATGC CTAAATATTT
  W
  TAAAGTAGGA AGAACATGAA AATCCACAAT AGCTGTTTGT AAGGAACTAA CAGCATTTAT
  AAGCAACATG CGTTAAACTC TTTTTTGTTG TTGTTTTTGT ATTGTTTTTG TTTTTGGAGA
  CAGGGTTTCT CTGTGTAACA TTAAACTCTT TTGCAAGGAT GGGGCTAAAG TATGCTGAGG
  TTGACAGTCT CCTTCCCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss38229620	NES09598868	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs28071998					SNP	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229620	NES09598868	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81846152 () rs orientation: forward

Symbol	Name	Function Class
Rr594264	regulatory region 594264	556 bp distal
Rr594265	regulatory region 594265	745 bp proximal