rs28068632 SNP Detail

Summary

• ID
  rs28068632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81481985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGAAAG CCTGTGCAGT
  GGAGCCAGAG CATCCACGCA GCAAGCTCAG GCCACTCTGC TCCTTCCTCT GTCAGTAGGA
  AACGCTTGCT TTGCCTTCTG GTGCCTTCAC ACCAACATTC CTGACTCTCT CACACCCGCC
  TCTCGTGTAA AGCTTGTCAG GTCTCACTTG GTGAAGTGAG TGAGACTGGA GAACATCAGA
  R
  TGTGCTGTTC AGGAGTTCTG CTTCAGAGCA GGGAGCCAGG CTGCATAAAA ATGTGGCCAA
  CGCTGCAGTG CGTGGGGGGA TTTAAGGCAG CGGCAGCACT CACGGAGTGA GACCAATGAG
  ATTCATTGCA GGTGTAGACC GTGGCAGTCT CCACGAAGTC TGGAGCAAGG GCTTTGGCAG
  GAACATATTT TTTATTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38230558	NES09591672	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28068632					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38230558	NES09591672	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81481985 () rs orientation: forward

Symbol	Name	Function Class
Rr594237	regulatory region 594237	1858 bp distal
Rr594238	regulatory region 594238	within coordinates
Rr594239	regulatory region 594239	498 bp proximal
Rr594240	regulatory region 594240	775 bp proximal